This file can be printed or viewed using Acrobat Reader, available through the Adobe website. The manual has also been translated into html. It is available through the following link. Please note that the translator is not perfect: The pdf form of the manual is much more accurate. Specifically, latex2html failed to translate figure 2. We have written such a set of man pages, and these are available with the UNIX distribution.
The man pages are also a part of the manual. Here is a list of the man pages. Here are the man pages that explain what the scripts can do. Data We are now posting published data sets to our web site. A list of links to the ftp subdirectories follows.
Each directory contains a set of text files of data. The development of this software as an add-on to R allows us to take advantage of the basic mathematical and statistical functions, and powerful graphics capabilities, that are provided with R. Further, the user will benefit by the seamless integration of the QTL mapping software into a general statistical analysis program.
Our goal is to make complex QTL mapping methods widely accessible and allow users to focus on modeling rather than computing. A key component of computational methods for QTL mapping is the hidden Markov model HMM technology for dealing with missing genotype data. We have implemented the main HMM algorithms, with allowance for the presence of genotyping errors, for backcrosses, intercrosses, and phase-known four-way crosses.
All of this may be done in the presence of covariates such as sex, age or treatment. To download the software, you must agree to the terms in that download.
R is an open-source implementation of the S language. As described on the R project homepage : " R is a system for statistical computation and graphics.
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